| Rank | Athlete I Team | Freshman 1600 | Junior 1600 | Difference |
| 1 | William Krochalk - Ronald Reagan | 5:44.60 | 4:35.65 | 1:08.95 |
| 2 | Owen Lincicum - Waukesha South | 5:40.78 | 4:37.32 | 1:03.46 |
| 3 | Jude Kane - Altoona | 5:41.68 | 4:41.17 | 1:00.51 |
| 4 | Declan Gregg - Aquinas | 5:29.36 | 4:33.21 | 56.15 |
| 5 | Andy Monroy - Arcadia | 5:47.62 | 4:53.34 | 54.28 |
| 6 | Zachery Waterman - Hudson | 5:25.07 | 4:32.57 | 52.5 |
| 7 | Vaughn Miller - Wisconsin Lutheran | 5:28.78 | 4:37.93 | 50.85 |
| 8 | Alex Gintz - Reedsburg Area | 5:36.46 | 4:46.66 | 49.8 |
| 9 | Clovis Cormier-Tardif - Lake Mills | 5:50.93 | 5:03.12 | 47.81 |
| 10 | Saul Lopez - Lake Mills | 5:47.97 | 5:00.74 | 47.23 |
| 11 | Luke Patterson - River Ridge | 5:40.60 | 4:53.92 | 46.68 |
| 12 | Isaac Dickenson - Solon Springs/Northwood | 5:11.35 | 4:26.65 | 44.7 |
| 13 | Max Kressner - Lake Mills | 5:42.98 | 4:58.76 | 44.22 |
| 14 | Santiago Gonzalez-Siaba - Kenosha St. Joseph | 5:44.31 | 5:00.49 | 43.82 |
| 15 | Benjamin Piontek - Green Bay Preble | 5:09.65 | 4:27.72 | 41.93 |
| 16 | Micah Mendoza - Kimberly | 5:27.32 | 4:46.00 | 41.32 |
| 17 | Carter Quackenbush - West... |